rs108808768 SNP Detail

Summary

• ID
  rs108808768
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27938057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTCCCAC ATCTCGAGGC
  CATTTTCTTT CTTCCCGAGG TCAATTCAAT TTGTTTCTGT CCCCATTGTT CAGAGAGCAC
  ACCCGCCTCA CCCTGGAGCT GGAGGAAGCG CCTCTTCCTC ATGGGAGAGC CTTCTGGAGT
  GTGGGAAAGT AGAGGAGAGA TGTGGGTAGG AGCTGCCTTG AATGGGGACA CCACCTGGGA
  R
  CATCTAGCAG ACTGGGTGGG GGGGCTTCCT CACAGGGAAC TATAGGATGG AGGCCAGGAC
  TTCCTGGCCC ACAGTAATTT CACCTGCACC TCTGACCCCA TGATACACCC CCCCCCCAGA
  TCAGGCACGA ATGTACATGG ATACACACAC ACACACACAT CTATTCCTTG GTGTCCCTTC
  CTCATCAGTT GACCACATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325349188	CHEV_17_27856028	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108808768					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27938057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8855	CpG island 8855	1695 bp distal
Rr524285	regulatory region 524285	529 bp distal
Rr524286	regulatory region 524286	240 bp distal
Spdef	SAM pointed domain containing ets transcription factor	within coordinates