rs108810596 SNP Detail

Summary

• ID
  rs108810596
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172331617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGGCTCTG GGTTAATTTC CCCTTTCTGC TGTAACAAAC
  TATAAACTTA GCCACACACT GGATGCTCTG ATAGTTTAGA AACTCAGCGG GAGATGCTGG
  S
  GGGGGTGGGG TGGGGGGGTG GGGATGGGGT GGGGGGGGCG GGGGGATGGG GGGTGGGGTG
  GGGCATACTC ACTGGGACTG AGGAGCTAGG GGAGGGTCC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss120011636	PARCsnp_1.19896	PARC_SEQ	INBRED	f	SNP	C	G
ss120014573	PARCsnp_1.09942	PARC_SEQ	INBRED	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs108810596					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172331617 () rs orientation: forward

Symbol	Name	Function Class
Rr29013	regulatory region 29013	16 bp distal
Rr29014	regulatory region 29014	183 bp proximal
Tagln2	transgelin 2	within coordinates
Tssr10218	transcription start site region 10218	1458 bp downstream
Tssr10219	transcription start site region 10219	1213 bp upstream
Tssr10220	transcription start site region 10220	1701 bp upstream
Tssr10221	transcription start site region 10221	1743 bp upstream
Tssr10222	transcription start site region 10222	1829 bp upstream