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rs108813789 SNP Detail
Summary
  • ID
    rs108813789
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr1:167198275 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TCTTCACCTG TGGGTCGTGA CTCCCACCTG TGGGTTGTGA
    CTCCCTGGAG GTTGAACAAC CCTTTCACAG GGGTCATACA TCAGATACCC TGCATATCTG
    W
    TGTTTACATC ATGATTTGTA ACTAACAAAA CTACCACTAT AAAGTAACAA TGAAAAATTT
    ATAGTTGGGG GTGGGGGCAT ACATGAAGAA CTGTATTAA                       
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss146037744 ENSMUSSNP803286 ENSEMBL ENSEMBL_Sanger f SNP A A T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs108813789 SNP A A T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:167198275 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Mgst3 microsomal glutathione S-transferase 3 1260 bp downstream
Rr396523 regulatory region 396523 503 bp downstream
Rr422697 regulatory region 422697 694 bp distal
Rr422698 regulatory region 422698 621 bp distal
Rr422699 regulatory region 422699 564 bp distal
Rr422700 regulatory region 422700 14 bp distal
Rr422701 regulatory region 422701 270 bp distal
Tssr14852 transcription start site region 14852 1711 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory