rs108818241 SNP Detail

Summary

• ID
  rs108818241
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93989557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCCAAAT CTTTTTTTAT
  TCTTTTCTTT TCCTGCTGTT CTGCACTATT AATTTGACTG TTTTAGCTGA CTTAGGAAGG
  ACAGGTGACC GAAACTCACT TGTTGATGCA CAAGCTGTGG CCCTGACTCT GAAAACAGGC
  CTTATGCTTG AGCAGCAAAT ACTTTACCCA CCAAGCAATC TCCCCTGCCC TGAAGGGAAG
  T
  TTTAAGGGGA CACAAAAATC TGATCTCTGG AAGAGCATGG AAGTACTTCA GCGGACAGGG
  AGACAGACAT AAAGTAAACA AATGGAGTCG CTGTTCAGGC TCTACTTAGA GGTCCAGGGG
  CTCATTCAAT ATCTCCACTC AAGCTCAATA CATTTATTGT TTGTTTTTGT TTTGAGACAG
  GATGTCAAAT ATCCTAAGCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss146951447	ENSMUSSNP2915386	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs108818241					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93989557 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11956	CpG island 11956	811 bp distal
Gm39885	predicted gene, 39885	within coordinates
Hsd17b12	hydroxysteroid (17-beta) dehydrogenase 12	1303 bp upstream
Mir670hg	MIR670 host gene (non-protein coding)	1424 bp downstream
Rr57226	regulatory region 57226	156 bp distal
Rr367242	regulatory region 367242	758 bp downstream
Tssr25319	transcription start site region 25319	1297 bp upstream