rs108820798 SNP Detail

Summary

• ID
  rs108820798
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135639889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TTTAGTGCAC TTACTGCAGA CAACTTGGGT TGGTTCCCAG
  CACCCACATC CGGCAACACT AGTTCTATAT GGCTATAGAA CTATAGTGCC TATAACTCTA
  R
  TTCCAGGGGA CCTGGTGCCC TCTGCCATTT TGGGGGACAT CTGCACTCAT GTGGTGCACA
  TATACTCAAG GATATACACA TTTAAAAGCA TTCTTTAGGG C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145543606	ENSMUSSNP4832405	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108820798					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135639889 () rs orientation: forward

Symbol	Name	Function Class
Gm57161	predicted gene, 57161	1013 bp downstream
Rr419242	regulatory region 419242	598 bp distal
Tssr8966	transcription start site region 8966	756 bp downstream