rs108822476 SNP Detail

Summary

• ID
  rs108822476
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:67188448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAAAGCAC GTTTGCTTCC
  CAAGGTGAAA AACCTGACAG AGGAGATGGC AGGCCTGGAT GAAAATATCG CCAAGCTGAC
  CAAGGAGAAG AAGGCCCTCC AGGAGGCCCA CCAGCAGACC CTGGATGACC TGCAGGCAGA
  GGAGGACAAA GTCAACACCC TGACCAAAGC CAAAACCAAG CTGGAACAGC AAGTGGATGA
  Y
  GTAAGCACGG TTCAGATGGC CTTCTGAAGT ATTTCTTTAA GTGCATTTCG ATTTTAACAG
  GTTTCTCTTT CCCCATCAGC TTGAGGGATC GCTAGAGCAA GAAAAGAAGC TGAGGATGGA
  CTTAGAAAGA GCCAAGAGGA AACTGGAGGG GGACCTGAAA CTGGCCCAAG AGTCCACAAT
  GGACATAGAA AACGATAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss132327385	ENSMUSSNP853110	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108822476					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67188448 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi3068	CpG island 3068			849 bp proximal
Myh8	myosin, heavy polypeptide 8, skeletal muscle, perinatal			Coding-Synonymous
				Splice-Site
Tssr102227	transcription start site region 102227			843 bp upstream
Tssr102228	transcription start site region 102228			1705 bp upstream
Tssr108547	transcription start site region 108547			121 bp downstream
Tssr108548	transcription start site region 108548			874 bp downstream
Tssr108549	transcription start site region 108549			1700 bp downstream