rs108823074 SNP Detail

Summary

• ID
  rs108823074
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100244971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGCT GCCCAGCGGG ACCAGTCCGC
  C
  GAGACGTAGC GGGCGCCTGA GGTCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145082848	ENSMUSSNP5180177	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324506107	CHEV_13_100878418	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108823074					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100244971 () rs orientation: forward

Symbol	Name	Function Class
BC001981	cDNA sequence BC001981	124 bp upstream
Cpgi6030	CpG island 6030	within coordinates
D13Die22	DNA segment, Chr 13, Dietrich 22	1920 bp distal
Rr280857	regulatory region 280857	within coordinates
Serf1	small EDRK-rich factor 1	within coordinates
Tssr120840	transcription start site region 120840	451 bp downstream
Tssr120841	transcription start site region 120841	320 bp downstream
Tssr120842	transcription start site region 120842	296 bp downstream
Tssr123774	transcription start site region 123774	280 bp upstream
Tssr123775	transcription start site region 123775	616 bp downstream