rs108823196 SNP Detail

Summary

• ID
  rs108823196
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33858622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGGCCAG CCCAGGATAT
  ATGAGACCCT GCTTCAAAAA ACAAATTAAA AAAAAGGAGG AGGAAGAGGA GGAGGAGAGG
  ACGATGACAA AAAACCCTCA TCACTGGGAA GATATAGTTC ATTGCTAGAG CTTGTTTAGC
  AAGGTGCTAA GTTCCATCCC TAACACCACA AAAATAAAAA TCCTCAAAAC AACCCTAATA
  D
  AAGAACTAAT ATAAAAAACT TCATAGGTAA TGGGAGACAA AGAGAGTAGA AAATGTTGGT
  GACTGTGGGC AACTGGGAAG AGAAAACTGA TTTAAAATGG GGTTATCTCC GAGGTCACCC
  TTAAGGAGCA TTATCATAAA GACACAGAGG AGGAAGAGGA GAGACCCATG CATTGAGTGG
  TATGCATTAC AGACAGGACA                                            
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss398056300	MGP_WTSI_17_33776593	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	G	G	G	G	G	T	T	G	T	T	T	T	T	T	T	G	G	G	T	T	G	T	G	G	T	T	T	G	T	G	G	G	G	G	G	G	T	G	G	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs108823196					SNP	T	T	G	G	G	G	G	T	T	G	T	T	T	T	T	T	T	G	G	G	T	T	G	T	G	G	T	T	T	G	T	G	G	G	G	G	G	G	T	G	G	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398056300	MGP_WTSI_17_33776593	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33858622 () rs orientation: forward

Symbol	Name	Function Class
Gm20507	predicted gene 20507	within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1	within coordinates
Rr392542	regulatory region 392542	within coordinates
Rr525901	regulatory region 525901	156 bp proximal
Tssr143785	transcription start site region 143785	1836 bp downstream
Tssr143786	transcription start site region 143786	1818 bp downstream
Tssr143787	transcription start site region 143787	1538 bp downstream
Tssr143788	transcription start site region 143788	1525 bp downstream
Tssr143789	transcription start site region 143789	1507 bp downstream
Tssr143790	transcription start site region 143790	1551 bp upstream
Tssr147440	transcription start site region 147440	263 bp downstream