rs108830553 SNP Detail

Summary

• ID
  rs108830553
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60939907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTTTCT CCAGCCCTTG
  GCTTAGGAAA TACAGAGGGT TGGCAAGCCA ATGAGAATTA GCTGTGTCTG TGATGTCATA
  AGTTACCAGG CAGACAGGTT TTCTGGAGTT TCCTAAATTA CCCTTCCTGG TTGCTGGAGT
  AGGCAGGATG CAAACTTATC ACGAGAATTT CCAATGTAGT TCGTCTTACT TAGTCTGAGT
  M
  TGCGTTACTA TAATAGAAAG CCACAGACTG GGTCATTTAT ATAAATAATA ATAAAATCTG
  GAGATTTAGC CGGACGTGGT GGCACACGCC TTTAATCCCA GCACTCGGGA GGCAGAGGCA
  GGCAGATTTC TGAGTTCGAG GCCAGCCTGG TCTACAAAGT GAGTTCCAGG ACAGCCAGGG
  ATATACCCCC TACATACACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147250102	ENSMUSSNP2192076	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss325640673	CHEV_18_60966489	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108830553					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60939907 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit78	DNA segment, Chr 18, Massachusetts Institute of Technology 78	1840 bp proximal
Rr405670	regulatory region 405670	1676 bp downstream
Rr405671	regulatory region 405671	878 bp downstream
Rr405672	regulatory region 405672	22 bp downstream
Tssr5344	transcription start site region 5344	836 bp upstream
Tssr151328	transcription start site region 151328	1818 bp downstream
Tssr151329	transcription start site region 151329	1747 bp downstream
Tssr151330	transcription start site region 151330	867 bp downstream
Tssr151331	transcription start site region 151331	848 bp downstream
Tssr151332	transcription start site region 151332	162 bp upstream
Tssr151333	transcription start site region 151333	700 bp upstream
Tssr151334	transcription start site region 151334	1064 bp upstream
Tssr151335	transcription start site region 151335	1073 bp upstream
Tssr151336	transcription start site region 151336	1107 bp upstream
Tssr151337	transcription start site region 151337	1161 bp upstream
Tssr151338	transcription start site region 151338	1217 bp upstream
Tssr151339	transcription start site region 151339	1396 bp upstream
Tssr153493	transcription start site region 153493	1220 bp downstream
Tssr153494	transcription start site region 153494	1242 bp downstream
Tssr153495	transcription start site region 153495	1458 bp downstream