rs108831638 SNP Detail

Summary

• ID
  rs108831638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170898707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TATGTGTGTG TATTGATAGA TAGATATAGA TAGATACCTA
  TACCTTTCAT ATATGGTTAT ATGTTCATAT ATATGGGTAT ATATAAAAGA TTAATGCGTG
  Y
  GCGTGTGCGT GTGCGTGTGT GTGTGAAGTG AAAGAAATCG CTACAGGGGC TTGAAGTGGA
  CGCTCATTTG TGACTATTCG GGAAAGCTGA CTGGGCCCAT G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146152357	ENSMUSSNP2494621	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108831638					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170898707 () rs orientation: forward

Symbol	Name	Function Class
Gm56232	predicted gene, 56232	1088 bp downstream
n-TDgtc7	nuclear encoded tRNA aspartic acid 7 (anticodon GTC)	1855 bp downstream
n-TEctc8	nuclear encoded tRNA glutamic acid 8 (anticodon CTC)	654 bp downstream
n-TGtcc5	nuclear encoded tRNA glycine 5 (anticodon TCC)	1196 bp downstream
Rr423202	regulatory region 423202	695 bp distal
Rr423203	regulatory region 423203	458 bp proximal
Rr423204	regulatory region 423204	1341 bp proximal