rs108832644 SNP Detail

Summary

• ID
  rs108832644
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45856997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCTTGGAC ACATCCCGGA
  CGCCACAGCG CGCATAGTCG AACTCGGCCT CCGCCACGTG TGTGTTGACC CGCTCGTGGT
  AGACCTGCAG GAGGAAGTTG GAGTCGCAAG GGGAGCAGAC TGCAGCTTTT GTCTACTCAT
  CCCAACACAG ACAGAAGTCC TTATAACTGA AATCATTTCC TCCACCACCA CCATCATCAT
  C
  ATCTCCGCCC CCTCCCTCTC CCAGCCCCAG TGGGTTTATT AAACCCGTAA GTGGTGATTG
  CCCTGAAAAC CCTGTACCAC GCACAAACAC CTCCTCTAAG AGTCTTGGCC TGAGACCCAG
  AAACCTGACT TTACATCTAC CTCTGCCAAG TAGAAGTACC CTCAGGCAAG TCTGAGCTGA
  GGTCTCCTTA GCTGAGAATA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325403375	CHEV_17_45683020	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108832644					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45856997 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9190	CpG island 9190	within coordinates
Cpgi9191	CpG island 9191	733 bp proximal
Rr527420	regulatory region 527420	1772 bp distal
Rr527421	regulatory region 527421	1622 bp proximal
Rr527422	regulatory region 527422	1974 bp proximal
Tmem151b	transmembrane protein 151B	within coordinates
Tssr5128	transcription start site region 5128	312 bp downstream
Tssr148205	transcription start site region 148205	1690 bp upstream