rs108834224 SNP Detail

Summary

• ID
  rs108834224
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6181950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTGCTCA GCTTCTGCTT
  CAGTAATTCA CCATCATATT AAGGCCATCC AGGAAGAAGT GTTATGTCTT GTATTTTAGT
  TGGAATTGGA GTAGTCCTTC CTTTCTGCAT TATTCTGTAC CCTACGTTTA GAATAGAGCA
  GAGTGAATAG TCTTCGAATA TCCTTTTATT TTAGTCCAGA GTTTATTTAT TTATTTATTT
  W
  TTTATTTTTT TTTTTTGCTG TCTCAAAAAG CTTTATTTTT ACTTGGTCCA AGACTTGACA
  GAGGCTCCAG GGCGGTTACA AAGCTGCCTA GTGGCTTGAG AGGTTCATTC AGGTGGAGGT
  CCCAGGGCGG GCTGGTGCAG AGCAGAGGGG GGAGCCCCTT GGAAGGCACA GAGGCCTCCT
  AGTCGTGCTT GAGAGTGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J
ss130471797	NCBIM37_NT_039636_chr17_6131675	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J
rs108834224					SNP	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130471797	NCBIM37_NT_039636_chr17_6131675	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6181950 () rs orientation: forward

Symbol	Name	Function Class
Gm15590	predicted gene 15590	179 bp downstream
Gm55175	predicted gene, 55175	161 bp downstream
Gm66616	predicted gene, 66616	within coordinates
Rr392221	regulatory region 392221	1657 bp downstream
Rr521310	regulatory region 521310	1960 bp distal
Rr521311	regulatory region 521311	559 bp proximal
Tulp4	TUB like protein 4	within coordinates