rs108834425 SNP Detail

Summary

• ID
  rs108834425
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:54792632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGGAGGAG GCTGGGTCTG GGTCTTGGGT AGACCCTGAC
  CCAGAATCAT CAGGGTGGTT TGTAGAAATG TAAACAAACT AGGAACTCGT TCCAGGGTGA
  G
  CAGCCGAACT CCCTGTGGTT TCCAAATAGG AGAGGAGTAA GAAATATATG AGAAGTCCAT
  CATCCAAGTC CAGTTTACAC TGGGGGCACA GGAAGCAGT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137771150	ENSMUSSNP3666150	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108834425					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:54792632 () rs orientation: forward

Symbol	Name	Function Class
Rr256757	regulatory region 256757	1769 bp proximal
Rr260899	regulatory region 260899	1032 bp distal
Rr260900	regulatory region 260900	569 bp proximal
Rr263772	regulatory region 263772	1608 bp distal
Snx6	sorting nexin 6	492 bp downstream