rs108835070 SNP Detail

Summary

• ID
  rs108835070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56784361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGGAGAA TTGCTGCAAG
  TGTGAGTCGA GTGTGGACTG CACCTGAGAC CCTGCCTCAA ATAACGAAAC GATTTTGTTT
  TACAGTCTGG GTTTTTTTCC CCTCTGGAAT TCATTCATTC CGGCCCAGAG CTGGAGACAT
  GAGCAAGAGC CTGGAGCCGA AGAGTCCGGG CGGAAGGACT GGGTCATAAA CGGGGAAGAG
  Y
  GCCATGAATA ATTGACAAGG AGCCTAAATT AAGAACAGGG CTTCCCAGAG CCTGCACCGC
  GGCCAGTTTA GCAGAGACGG CTTTGTCCTC TTGCCTGACT GGGGTGACCC TGATTGACGT
  ACGTGGTGCT AGTCGAGATT GGAGCACGTA GAAGGTGCCG GAGGTTTGCA TAGTGTTCAG
  GGGCCCTTAG TGTAGTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398558551	MGP_WTSI_17_56616784	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108835070					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398558551	MGP_WTSI_17_56616784	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56784361 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9362	CpG island 9362	602 bp distal
Gm9258	predicted gene 9258	917 bp upstream
Gm32822	predicted gene, 32822	within coordinates
Ptprs	protein tyrosine phosphatase receptor type S	881 bp upstream
Rr529099	regulatory region 529099	388 bp distal
Rr529100	regulatory region 529100	889 bp distal
Rr529101	regulatory region 529101	766 bp proximal
Rr529102	regulatory region 529102	1957 bp proximal
Tssr148809	transcription start site region 148809	901 bp upstream
Tssr148810	transcription start site region 148810	881 bp upstream
Tssr148811	transcription start site region 148811	868 bp upstream
Tssr148812	transcription start site region 148812	844 bp upstream