rs108837373 SNP Detail

Summary

• ID
  rs108837373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30064014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCCCAAG ACCCAAAAGG
  AGCCCACCTC CTCCTCTGGT TCCTCAGGCA GCCTAGCTTC TCTTCCCTAG AGTCTCCTTT
  CCAGATCCCC CTGAATCAAG TCTATCTCCT TTAAGAAATC CCTTCTGCTC TCTCTGGTCT
  CCCTGGGTTT CCCTGTGTGC AGATGTCAAA GGTGGGAGGG GCCTGCCAAG GTCTCTGGGT
  Y
  GAGTTGCCCA CCAAGAGAAA CTGATTAAGG GCCAGAGGAA GAAGTACTCA TAACTATTAG
  AGTATTTAGT ACTCTTGGTA CTCATTATAG TACAGCCTGG TCATGTGACT CACCAGCCAA
  GGTCAGCTGG CTTCTACACG GTCAGGAGAC CCGCTTCCAA AAGATCACCC TCTGGTCATC
  TGCTGCCATC CTCCTATAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325355121	CHEV_17_29981985	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108837373					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30064014 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8929	CpG island 8929	1951 bp distal
Gm56908	predicted gene, 56908	1503 bp upstream
Mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1	within coordinates
Rr330461	regulatory region 330461	1614 bp distal
Rr330462	regulatory region 330462	1387 bp proximal
Rr341132	regulatory region 341132	987 bp proximal
Rr392501	regulatory region 392501	1768 bp upstream
Tssr143596	transcription start site region 143596	1490 bp upstream
Tssr143597	transcription start site region 143597	1507 bp upstream