rs108839541 SNP Detail

Summary

• ID
  rs108839541
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:13775773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACAGAGT AGAGAGTGTG
  CCTGTCTCCT GAGAGCAACC TCACTGGAGG GCTGCTAGCT TACAGAGTCC CCGTGTCAGA
  GCCACTTCTG TCCTGTGGCC AGTGAACCCT CACTGGGCTG GTGAGGTGAG TTAGGTGTGG
  CCTTAGTATC AAGGGTGGAG ACATTCTGCC TGGGTTTCCC AGAGCATGGC CAGGCGCCTA
  C
  GCTGTCATGT GATCACTTTG GATGTGTGTA AGAGAAAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGCG CACATGATAT TTATTTCTAA AATGCACCAG CTGCTTCAAA AAGCATGTGG
  AATGGGACGG CTGGGCTCTC ATGCGCTTCA AATATTGAAC TAGGCTGGCC TCCCACTCCT
  CTGAAGGAAT AGGAGCAACT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145197233	ENSMUSSNP6132338	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108839541					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:13775773 () rs orientation: forward

Symbol	Name	Function Class
2700054A10Rik	RIKEN cDNA 2700054A10 gene	1417 bp upstream
Gm49936	predicted gene, 49936	within coordinates
Rr392310	regulatory region 392310	394 bp upstream
Rr522380	regulatory region 522380	within coordinates
Rr522381	regulatory region 522381	868 bp proximal