rs108841745 SNP Detail

Summary

• ID
  rs108841745
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:41357844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTC AGGTAGTTGA TGGAGCGGGG
  K
  GGGGGGGGGG AGGCGGGGAA GCTTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146402227	ENSMUSSNP5295570	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss325809418	CHEV_19_41443895	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs108841745					SNP	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41357844 () rs orientation: forward

Symbol	Name	Function Class
Pik3ap1	phosphoinositide-3-kinase adaptor protein 1	Intron
Rr405959	regulatory region 405959	1643 bp downstream
Rr547617	regulatory region 547617	1814 bp distal
Rr547618	regulatory region 547618	1078 bp distal
Rr547619	regulatory region 547619	306 bp proximal
Tssr159304	transcription start site region 159304	802 bp downstream
Tssr159305	transcription start site region 159305	843 bp downstream