rs108842105 SNP Detail

Summary

• ID
  rs108842105
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69275449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGTTGTTT CCCGGTTCTA
  CACATGCTCA GGAAATACTG TGTTTTCACC GTTTTCGATC ACTCCCATCC GACCAGTTTT
  AGTTGAGGGC CTCTCCACGA TCCGCTGTCA TCATTTAGCA GTCCCACTTT TTTCATGACA
  TACCTTCTTT TTTTTTTTTT TTACTGGTGG AGTAACAAAC CCAAGATTAT AAATGGTTGG
  Y
  ATGAGGTGAA TTGCCAGTGC GGTGGAGCTG CTCTTGAATC GTTATTCTCA GTCCTACAAG
  TAGACTCAGT AGAGCACATC TTAAAATGTT CCCTCTTGCT GAGTGTGATG GCACATGCCT
  TTAATCCAAG AACTCAGAAG GCAGAGGCAG GGGGATCTCT GTAAACACCT GGGCAACTTG
  TTCTAGAGAA TGAGTTCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss137856399	ENSMUSSNP1029825	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss324083391	CHEV_12_70329662	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs108842105					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69275449 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4690	CpG island 4690	389 bp distal
Gm47545	predicted gene, 47545	within coordinates
Pole2	polymerase (DNA directed), epsilon 2 (p59 subunit)	480 bp upstream
Rr403319	regulatory region 403319	361 bp downstream
Rr467012	regulatory region 467012	739 bp distal
Rr467013	regulatory region 467013	32 bp distal
Rr467014	regulatory region 467014	463 bp distal
Rr467015	regulatory region 467015	646 bp proximal
Rr467016	regulatory region 467016	738 bp proximal
Tssr113624	transcription start site region 113624	34 bp downstream
Tssr116494	transcription start site region 116494	491 bp upstream