rs108842461 SNP Detail

Summary

• ID
  rs108842461
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100590172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TAATTTTTCT CTTAAACTTG GGCAATTACA GCTATACATG
  TGCCATTAAG CACGCCCTTA GCAACGCCTC AAAGGTTTAA ACAAGTCTTA TGTTCATATT
  Y
  TCTCATTAAA TTATTTTCTG GTTCTTCTTT GACACATTTT CTTTTTCAAT TTGGGGATAT
  GTTCTTGAAT TTGCATCTGT AAGGACTACA CATTTCTATT T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss137995773	ENSMUSSNP2240148	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108842461					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100590172 () rs orientation: forward

Symbol	Name	Function Class
Gm48585	predicted gene, 48585	872 bp downstream
Gm48586	predicted gene, 48586	180 bp upstream
Rps6ka5	ribosomal protein S6 kinase, polypeptide 5	within coordinates