rs108843887 SNP Detail

Summary

• ID
  rs108843887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123059640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAGAAGAA GAAGAAGAAG AAGAAGAAGA AGAAGAAGAA
  GAAGAAGAAG AAAGTTGCGT GGCCTAGATC ACTCACCAGG GTCAGGAATG GGGGCTGTGG
  Y
  TTGCTTGGGG ACCCTCTATG TCTCCCTCTT TGCTTCCTGG CTACTGTGAC ATGAGCGGCT
  TTACTGTGTC AGTCCTCCTG CCTGTCACGA TGCTTTGCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135761710	ENSMUSSNP6221548	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320918497	CHEV_3_122968909	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs108843887					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123059640 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13776	CpG island 13776	954 bp proximal
Gm56815	predicted gene, 56815	within coordinates
Gm66521	predicted gene, 66521	within coordinates
Rr77168	regulatory region 77168	760 bp proximal
Sec24d	SEC24 homolog D, COPII coat complex component	1464 bp upstream
Tssr31540	transcription start site region 31540	1204 bp downstream
Tssr31541	transcription start site region 31541	1173 bp downstream
Tssr31542	transcription start site region 31542	1190 bp upstream
Tssr31543	transcription start site region 31543	1217 bp upstream
Tssr31544	transcription start site region 31544	1454 bp upstream