rs108845105 SNP Detail

Summary

• ID
  rs108845105
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36726471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAGTTCA GCTGGACTGA
  GAGCCAGTCC CAACCTGTTC CAGACTCCAC TTCATCCTTC AAGCCTGGTG CCTGGACACC
  CTGAGGGAGG AAACAGAGGA CAGAGAAGCA CTTCTGGCAC CCAACGCGGC CCACAGCTGG
  AGGAAGCTAA CATACACCTG GGAGGATGCT GGTACTTGAT GGGCTGGGCT ATGTCACAAG
  W
  GGGTGTGGTA CAGACCTTTG ATGGGCTGGG CTATGTCACA AGGGAGTGTG GTACAAATGC
  TTGCCATATA ATGCTTTGCT ATTGCTCTCC TGGTTGGGTC ACCAATCTTT AGACACTTAA
  ATTGTCTAAA TGTAAAGAGA ATTAATGTCA CTACAGGCTG CTAAAGAGCA GAAGTTACTG
  TTGGCATGAC CTGGCAATAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147608133	ENSMUSSNP252762	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss324923458	CHEV_15_36655982	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs108845105					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36726471 () rs orientation: forward

Symbol	Name	Function Class
A830021M18Rik	RIKEN cDNA A830021M18 gene	15 bp upstream
Cpgi7034	CpG island 7034	1109 bp proximal
Gm41297	predicted gene, 41297	within coordinates
Gm49263	predicted gene, 49263	991 bp downstream
Tssr131078	transcription start site region 131078	950 bp downstream
Tssr131079	transcription start site region 131079	93 bp upstream
Tssr131080	transcription start site region 131080	134 bp upstream
Tssr131081	transcription start site region 131081	165 bp upstream
Tssr131082	transcription start site region 131082	440 bp upstream
Tssr131083	transcription start site region 131083	633 bp upstream
Tssr131084	transcription start site region 131084	679 bp upstream