rs108847668 SNP Detail

Summary

• ID
  rs108847668
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52141727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCAGGCAG CTTTCTGAGA
  GCCCCCTCGT CCATCCTTGA TTTCCCTAGA ATTCTCCAAT TTTTTCAACT TTTTTTTTAT
  AATTCAAAAT ACCATGCCAA AGGCATAAGG ACATAAACAA ATATGAACTA ATTTTCATTT
  GGGGAACTAC CTCCTCCCCC TTCTGCTCCT CCTCCCCTTC TTCTTCCTCC TCGCCCCCCC
  M
  CCCCCAAGCC AACGAGCCCC CTGGAAAGCA AAGCAAGAAG CTATGGGTGA TTACAAAGAG
  CAAAACAACA TAAAACATGA GTTTCTCTTC CTGGCTCAGG TTTTTCCCTT CAAGTCCTGG
  GTGACTTCAA ATTTTCTTGC CTTGATTTGC CAAAGTAGGG ACTTGTCTAA CTAGGTGCCA
  GTGTCCCCAC TGAGCAGGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ
ss398453349	MGP_WTSI_17_51974024	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	C	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ
rs108847668					SNP	A	A	A	C	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398453349	MGP_WTSI_17_51974024	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52141727 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9312	CpG island 9312	1068 bp distal
Gm6934	predicted gene 6934	within coordinates
Rr370288	regulatory region 370288	1307 bp downstream
Rr528752	regulatory region 528752	1537 bp distal
Rr528753	regulatory region 528753	1717 bp distal
Rr528754	regulatory region 528754	919 bp distal
Satb1	special AT-rich sequence binding protein 1	1409 bp upstream
Tssr145166	transcription start site region 145166	1922 bp downstream
Tssr145167	transcription start site region 145167	1899 bp downstream
Tssr145168	transcription start site region 145168	1874 bp downstream
Tssr145169	transcription start site region 145169	1682 bp downstream
Tssr145170	transcription start site region 145170	1662 bp downstream
Tssr145171	transcription start site region 145171	1438 bp downstream
Tssr145172	transcription start site region 145172	228 bp downstream
Tssr148684	transcription start site region 148684	1596 bp upstream
Tssr148685	transcription start site region 148685	1561 bp upstream
Tssr148686	transcription start site region 148686	1453 bp upstream
Tssr148687	transcription start site region 148687	1429 bp upstream
Tssr148688	transcription start site region 148688	1400 bp upstream