rs108848196 SNP Detail

Summary

• ID
  rs108848196
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88193166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGAGAGATTG ACCGTTTCTG GGAACTCTGT TGTGGGGAGT
  CTGGATTTAG TCTCTTCAAG TGCTCTGATT GACAGGGAAG AGCTGCAGCA GCTTTCATTG
  G
  CGATACTCTG CCACACGAAG TCACCTTCGC CCGCTGCGGT GACAGACAAT ACTTCTGATA
  AAGTCTGTTG AATTCTTTTT TAAGCTCATC ATAGTTATCC T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144899401	ENSMUSSNP1422856	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108848196					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88193166 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Rr18063	regulatory region 18063	1035 bp proximal
Rr28029	regulatory region 28029	1580 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	579 bp upstream