rs108848775 SNP Detail

Summary

• ID
  rs108848775
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:28397254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGTGTC AATCAGCACA
  TACATAACTT ATGCCCACTG CCATGCCACC GTTGTGGTGA TCAAGAGTAA ATGGAAATGA
  AGTATCATTT GAGGCAGGAA AGGATTCTAG ATTGAGTGTG TGGTTCAAGT TCAAATTCTA
  TCATGTTGAG CTTTGGAAAC CTTGGTGGAG GTCCTTTCCT TACGGTGGAC TTGAGTTTCT
  R
  ATCAGAACTG TGATGAGATT GAGTTTGGTG ATTCCCCAAT GTTTCTTTCT ATTAAAATTC
  TGCAATTCTT AGTCAAGACA AAAATAGCGA ACTTTTTTCT ACGCTGCCTC AGAAATGTAG
  TCCTTGTAAC CTCACCCTCC CACCCCCACT CCCAACCTGG GTCTACTGGC TTTACCGAAC
  AGTATTTCTT CATTCCTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325352122	CHEV_17_28315225	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108848775					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28397254 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C230013L11Rik	RIKEN cDNA C230013L11 gene			598 bp upstream
Rr524454	regulatory region 524454			812 bp distal
Rr524455	regulatory region 524455			1085 bp distal
Rr524456	regulatory region 524456			609 bp distal
Rr524457	regulatory region 524457			152 bp distal
Tssr143392	transcription start site region 143392			1066 bp downstream
Tssr143393	transcription start site region 143393			831 bp downstream
Tssr147097	transcription start site region 147097			598 bp upstream
Zfp523	zinc finger protein 523			Intron
				Noncoding-Transcript-Variant