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rs108852082 SNP Detail
Summary
  • ID
    rs108852082
  • Variation Type
    SNP
  • Alleles
    A
Genome Location and Flanking Sequence
  • Location
    Chr6:50584591 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                        T TAGGGCTACA CAGAGAACCC CAATCTCAAA ACAAACAAAT
    AAACAACAAC AACAACAACA TCAAAACCCA ACCACAAACA CAAAGCCTTT TTCCACAAAA
    A
    AGTACGCCCT TTAGCTTGGA ACCAGAAACA CTTTTAGCTT GACCTCTCTC CCACAGGAAG
    ATGAAAACTA CAAAACTCTA AATCATTCCC ATCTTGATAC A                    
    
    A = A
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
DBA/2J
ss133182570 ENSMUSSNP1640990 ENSEMBL ENSEMBL_Sanger f SNP A A
SNP Consensus Information
SNP Consensus Type
A/J
DBA/2J
rs108852082 SNP A A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:50584591 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm4782 predicted gene 4782 1026 bp upstream
Rr379340 regulatory region 379340 within coordinates
Tssr56424 transcription start site region 56424 809 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory