rs108854459 SNP Detail

Summary

• ID
  rs108854459
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:132569646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACACACAC ACACACACCA ACACAACCCA CACGCAAATG
  TATGTGTGTG GATAATATTG TCATTAACCC TTTCTGCAAT ATAGCCCCAT GCATTATATA
  R
  AAAGATATTC CATCCTTTCC TCTTCTCCCC TCCTCCCTCC TTTCTCCCAA CAAGGAGAAA
  ACGCCCCCTT CCCCAGCTTC ACCAAAAAAA GGGGAGGGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144496912	ENSMUSSNP4114510	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss321694536	CHEV_5_133016677	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108854459					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:132569646 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Auts2	autism susceptibility candidate 2			Intron
				Noncoding-Transcript-Variant
Cpgi16710	CpG island 16710			588 bp proximal
Cpgi16711	CpG island 16711			1852 bp proximal
D5Mit324	DNA segment, Chr 5, Massachusetts Institute of Technology 324			146 bp proximal
Rr621808	regulatory region 621808			432 bp proximal
Rr621809	regulatory region 621809			1054 bp proximal
Rr621810	regulatory region 621810			1840 bp proximal
Tssr53594	transcription start site region 53594			1196 bp downstream
Tssr53595	transcription start site region 53595			1384 bp downstream
Tssr53596	transcription start site region 53596			1568 bp downstream