rs108855687 SNP Detail

Summary

• ID
  rs108855687
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40157423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGAAACTGC GAATGGCTCA TTAAATCAGT TATGGTTCCT
  TTGGTCGCTC GCTCCTCTCC TACTTGGATA ACTGTGGTAA TTCTAGAGCT AATACATGCC
  G
  ACGGGCGCTG ACCCCCCTTC CCGGGGGGGG GGGGGGATGC GTGCATTTAT CAGATCAAAA
  CCAACCCGGT GAGCTCCCTC CCGGCTCCGG CCGGGGGTC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325385453	CHEV_17_39983477	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108855687					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40157423 () rs orientation: forward

Symbol	Name	Function Class
AY036118	cDNA sequence AY036118	1133 bp downstream
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	within coordinates
Rn18s-rs5	18s RNA, related sequence 5	within coordinates
Rr331228	regulatory region 331228	1823 bp distal
Rr331229	regulatory region 331229	within coordinates
Rr339832	regulatory region 339832	within coordinates
Tssr144602	transcription start site region 144602	171 bp downstream
Tssr144603	transcription start site region 144603	28 bp downstream
Tssr144604	transcription start site region 144604	7 bp downstream
Tssr144605	transcription start site region 144605	28 bp upstream
Tssr144606	transcription start site region 144606	86 bp upstream
Tssr144607	transcription start site region 144607	195 bp upstream
Tssr144608	transcription start site region 144608	342 bp upstream
Tssr144609	transcription start site region 144609	486 bp upstream
Tssr144610	transcription start site region 144610	645 bp upstream
Tssr144611	transcription start site region 144611	782 bp upstream
Tssr144612	transcription start site region 144612	911 bp upstream
Tssr144613	transcription start site region 144613	1030 bp upstream
Tssr144614	transcription start site region 144614	1062 bp upstream
Tssr144615	transcription start site region 144615	1149 bp upstream
Tssr144616	transcription start site region 144616	1184 bp upstream
Tssr144617	transcription start site region 144617	1257 bp upstream
Tssr144618	transcription start site region 144618	1287 bp upstream
Tssr144619	transcription start site region 144619	1309 bp upstream
Tssr144620	transcription start site region 144620	1358 bp upstream
Tssr144621	transcription start site region 144621	1463 bp upstream
Tssr144622	transcription start site region 144622	1482 bp upstream
Tssr144623	transcription start site region 144623	1521 bp upstream
Tssr144624	transcription start site region 144624	1618 bp upstream
Tssr144625	transcription start site region 144625	1660 bp upstream
Tssr144626	transcription start site region 144626	1677 bp upstream
Tssr144627	transcription start site region 144627	1716 bp upstream
Tssr144628	transcription start site region 144628	1886 bp upstream
Tssr144629	transcription start site region 144629	1917 bp upstream
Tssr144630	transcription start site region 144630	1973 bp upstream
Tssr144631	transcription start site region 144631	1994 bp upstream
Tssr148056	transcription start site region 148056	1774 bp upstream
Tssr148057	transcription start site region 148057	1382 bp upstream
Tssr148058	transcription start site region 148058	777 bp upstream
Tssr148059	transcription start site region 148059	745 bp upstream
Tssr148060	transcription start site region 148060	593 bp upstream
Tssr148061	transcription start site region 148061	508 bp upstream
Tssr148062	transcription start site region 148062	within coordinates
Tssr148063	transcription start site region 148063	122 bp downstream
Tssr148064	transcription start site region 148064	364 bp downstream
Tssr148065	transcription start site region 148065	1226 bp downstream
Tssr148066	transcription start site region 148066	1302 bp downstream
Tssr148067	transcription start site region 148067	1383 bp downstream
Tssr148068	transcription start site region 148068	1499 bp downstream
Tssr148069	transcription start site region 148069	1694 bp downstream
Tssr148070	transcription start site region 148070	1763 bp downstream
Tssr148071	transcription start site region 148071	1776 bp downstream