rs108855735 SNP Detail

Summary

• ID
  rs108855735
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178164485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCA CCGCCACGCG CACCCATCAC
  A
  CAACACTCAC CCGCCACCTT CCGCC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss146354947	ENSMUSSNP5844889	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs108855735					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178164485 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1090	CpG island 1090	within coordinates
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	within coordinates
Rr29068	regulatory region 29068	within coordinates
Rr372516	regulatory region 372516	142 bp upstream
Tssr316	transcription start site region 316	149 bp downstream
Tssr317	transcription start site region 317	667 bp downstream
Tssr318	transcription start site region 318	884 bp downstream
Tssr10384	transcription start site region 10384	997 bp downstream
Tssr10385	transcription start site region 10385	783 bp downstream
Tssr10386	transcription start site region 10386	706 bp downstream
Tssr10387	transcription start site region 10387	162 bp upstream
Tssr10388	transcription start site region 10388	372 bp upstream
Tssr10389	transcription start site region 10389	950 bp upstream
Tssr10390	transcription start site region 10390	1051 bp upstream
Tssr10391	transcription start site region 10391	1274 bp upstream
Tssr15481	transcription start site region 15481	827 bp upstream
Tssr15482	transcription start site region 15482	756 bp upstream
Tssr15483	transcription start site region 15483	512 bp upstream
Tssr15484	transcription start site region 15484	180 bp downstream
Tssr15485	transcription start site region 15485	239 bp downstream
Tssr15486	transcription start site region 15486	320 bp downstream
Tssr15487	transcription start site region 15487	371 bp downstream
Tssr15488	transcription start site region 15488	728 bp downstream
Tssr15489	transcription start site region 15489	753 bp downstream
Tssr15490	transcription start site region 15490	786 bp downstream
Tssr15491	transcription start site region 15491	820 bp downstream
Tssr15492	transcription start site region 15492	854 bp downstream