rs108856081 SNP Detail

Summary

• ID
  rs108856081
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:48039650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAAGATG AAGGGGAAGA
  AAAACTAGGA AGAATGGAAA GCGAGAGATG GAGAGGAGAG ATAGAGATTC AGTGGGCGTG
  CTTGGGGGCA GACTGGCAGA GAGACTGAGA CACACGGACA GAGCTAGGAG ACACACAGAG
  AGAGAGAGGT ATGGAAGGAG AAAGGGAAGA AAGAAGAAGG CAGGGCCCGG GCCTGACACA
  Y
  CCACCGCCTT CCACAGGGTC CCCCTGAAGA AAATGAAGAG TATCCGGGAG ACCATGAAGG
  AACAAGGTGT CCTCAAAGAC TTTCTGAAGA ACCACAAGTA TGACCCTGGC CAGAAATACC
  ACTTTGGCAA GTTTGGTGAC TACAGTGTAC TCTATGAGCC CATGGCCTAT ATGGATGTAA
  GTCTTAACAC CCTTCTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398352934	MGP_WTSI_17_47865674	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108856081					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398352934	MGP_WTSI_17_47865674	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48039650 () rs orientation: forward

Symbol	Name	Function Class
D17Mit201	DNA segment, Chr 17, Massachusetts Institute of Technology 201	1390 bp distal
Pgc	progastricsin (pepsinogen C)	Intron
Rr528106	regulatory region 528106	1984 bp proximal
Tssr5147	transcription start site region 5147	25 bp upstream
Tssr5148	transcription start site region 5148	585 bp downstream
Tssr145003	transcription start site region 145003	1877 bp downstream
Tssr145004	transcription start site region 145004	7 bp upstream
Tssr145005	transcription start site region 145005	35 bp upstream
Tssr145006	transcription start site region 145006	44 bp upstream
Tssr145007	transcription start site region 145007	71 bp upstream
Tssr145008	transcription start site region 145008	105 bp upstream
Tssr145009	transcription start site region 145009	122 bp upstream
Tssr145010	transcription start site region 145010	525 bp upstream
Tssr145011	transcription start site region 145011	538 bp upstream
Tssr145012	transcription start site region 145012	550 bp upstream
Tssr145013	transcription start site region 145013	569 bp upstream
Tssr145014	transcription start site region 145014	1355 bp upstream
Tssr145015	transcription start site region 145015	1417 bp upstream
Tssr145016	transcription start site region 145016	1428 bp upstream
Tssr145017	transcription start site region 145017	1873 bp upstream
Tssr145018	transcription start site region 145018	1885 bp upstream
Tssr145019	transcription start site region 145019	1916 bp upstream
Tssr145020	transcription start site region 145020	1937 bp upstream
Tssr145021	transcription start site region 145021	1963 bp upstream
Tssr145022	transcription start site region 145022	1995 bp upstream
Tssr148459	transcription start site region 148459	71 bp downstream
Tssr148460	transcription start site region 148460	92 bp downstream
Tssr148461	transcription start site region 148461	131 bp downstream
Tssr148462	transcription start site region 148462	150 bp downstream
Tssr148463	transcription start site region 148463	553 bp downstream
Tssr148464	transcription start site region 148464	631 bp downstream
Tssr148465	transcription start site region 148465	1396 bp downstream
Tssr148466	transcription start site region 148466	1409 bp downstream
Tssr148467	transcription start site region 148467	1904 bp downstream
Tssr148468	transcription start site region 148468	1935 bp downstream