rs108858620 SNP Detail

Summary

• ID
  rs108858620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113395648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTA TGGTCTAGGT CTGAAGATCA
  Y
  TTCTGCCTTA CTATGGACAT GTGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss138742486	ENSMUSSNP3357581	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss324175520	CHEV_12_114670239	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs108858620					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113395648 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	1490 bp upstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Tssr115504	transcription start site region 115504	1788 bp downstream
Tssr118018	transcription start site region 118018	1643 bp upstream
Tssr118019	transcription start site region 118019	1587 bp upstream
Tssr118020	transcription start site region 118020	1542 bp upstream
Tssr118021	transcription start site region 118021	1425 bp upstream
Tssr118022	transcription start site region 118022	1396 bp upstream
Tssr118023	transcription start site region 118023	1233 bp upstream