rs108864264 SNP Detail

Summary

• ID
  rs108864264
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:65141310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATT TACCTGCATG TTTGTAAGTG
  Y
  ACTACGTGAG TTGTGCTTGG AGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149170505	ENSMUSSNP192092	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss319746478	CHEV_1_65148725	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108864264					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:65141310 () rs orientation: forward

Symbol	Name	Function Class
Cpgi330	CpG island 330	797 bp proximal
Cryga	crystallin, gamma A	within coordinates
Gm28845	predicted gene 28845	within coordinates
Tssr102	transcription start site region 102	1499 bp downstream
Tssr7112	transcription start site region 7112	1753 bp downstream
Tssr7113	transcription start site region 7113	1635 bp downstream
Tssr7114	transcription start site region 7114	1621 bp downstream
Tssr7115	transcription start site region 7115	1609 bp downstream
Tssr7116	transcription start site region 7116	1547 bp downstream
Tssr7117	transcription start site region 7117	1508 bp downstream
Tssr7118	transcription start site region 7118	1455 bp downstream
Tssr7119	transcription start site region 7119	895 bp upstream
Tssr11968	transcription start site region 11968	1704 bp upstream
Tssr11969	transcription start site region 11969	1681 bp upstream
Tssr11970	transcription start site region 11970	1513 bp upstream
Tssr11971	transcription start site region 11971	1489 bp upstream
Tssr11972	transcription start site region 11972	1468 bp upstream
Tssr11973	transcription start site region 11973	856 bp downstream
Tssr11974	transcription start site region 11974	931 bp downstream
Tssr11975	transcription start site region 11975	998 bp downstream
Tssr11976	transcription start site region 11976	1212 bp downstream