rs108864336 SNP Detail

Summary

• ID
  rs108864336
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52938060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATTACTT ATAGCAAATA
  TTTGATTAAA ATCTAATTTA TGAAAAAGCC ACTCTCTGGC CCTTGTCCTG ATCCCAGTGC
  TTGGCTGCTA GGGTTTACAA CAACACTGGA GGACACCAAT AAAGCTCTAC TAAGGCCACA
  GAAGACGTCT CATGAGTAGG CTAGGTACAG AAAACACAGA GGTCGGCACT TTAGACGCCT
  S
  TCCACGTAGG TGAGACAGAG GGATTACAGG CCCAGGGGAT TCTGATATAG AAAGCAAGTG
  AGACTCACAA ACAATCTATT CTTAACCCAC ACAAAATCTT TTAGCGGCTA TTTTTTAACA
  AGATACTTTC CTTAGCGCTA CAAAAGCCCT GCTCTGGGGT CCAGGCCAGT GACTGAGTTA
  TCCTTAGGTG CATTTATGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss133191939	ENSMUSSNP2926797	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs108864336					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52938060 () rs orientation: forward

Symbol	Name	Function Class
Jazf1	JAZF zinc finger 1	within coordinates
Rr630519	regulatory region 630519	633 bp proximal
Tssr61049	transcription start site region 61049	648 bp downstream