rs108865123 SNP Detail

Summary

• ID
  rs108865123
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:37513408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAGGCCA CTAAGGCATG
  CCGCTCAAGT CTAATCTGAC CTGAACTCTG GAAGTGTTTG GGCTTCATGT CCTTTGTCCT
  CCTGTCTTAG GCTGACTCCT CTGAGACTAG TGTCCTGACA CAGCAAAGGC TGCCTCGGGT
  TGTTTCTGCA TAACTTCCTC CTTTCAGAAC CCTCAGAGTC TGAGATTTTT CCAGCAGCTC
  R
  GTTGGTATTC TTCCTTCTGT ACTGACGCAG AATGTTGTTA CCAGGTAGAA GCCAGGGCTC
  ACGGCATTTA TTTCTGTCTC TTGGACAACA GCCTTACCCT GCAGAGTCTA CGGCCTAGTG
  TCTCAGAATG GTCAACTGGA CATTTCCCTT CTCTCTAGCT GCTTTATGTC AGAAGGTTCA
  CCACCACCAG AAACACACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss148941490	ENSMUSSNP4090165	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs108865123					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37513408 () rs orientation: forward

Symbol	Name	Function Class
Mgat4a	mannoside acetylglucosaminyltransferase 4, isoenzyme A	Intron
Rr396000	regulatory region 396000	316 bp upstream
Rr409535	regulatory region 409535	624 bp distal
Rr409536	regulatory region 409536	within coordinates
Tssr11302	transcription start site region 11302	1128 bp downstream