rs108868282 SNP Detail

Summary

• ID
  rs108868282
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:20360913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGAGATAGGT GTGTCCCTGA GACACTAAAT GGAAGGATGT
  TCACAATGGT GGAAAGTGGC AGAGAGTTGC AGAGTTTGGG GATTGCAGTT TATTGCCTTG
  T
  GCAGGAATAA AAGCTACCCA CTGCCACAGC TATTTTTGAA GGCGGAACTT ATTCACAGGT
  AGTGGTGGTA AAATACCAGA AGCCATACAT AACGTCTGAC C                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss137276236	ENSMUSSNP1183508	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108868282					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:20360913 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4468	CpG island 4468	1160 bp proximal
Gm49692	predicted gene, 49692	1834 bp downstream
Gm49697	predicted gene, 49697	1603 bp upstream
Gm61293	predicted gene, 61293	1305 bp upstream
Rr463625	regulatory region 463625	1168 bp proximal
Tssr112921	transcription start site region 112921	1303 bp upstream