rs108870957 SNP Detail

Summary

• ID
  rs108870957
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172347696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATTCCCAA GGAGATAAGA GTTGAGGAAT CCTGGAAATG
  AGCTGCACAG CTTTTTGGAT TAAGCAGCAG CGATGGCAGC AGAATAATCG GTGGTGGTGG
  Y
  GGTGGTGGCG GTGGTGGCAG AAGATTGTCT CCCTTCCTCT ACTACCTACT ACTAGGGTTT
  GTCAACAGTT TTCCACACTT AGGTTGGAGT AAGGTTCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss120014641	PARCsnp_1.10010	PARC_SEQ	INBRED	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs108870957					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172347696 () rs orientation: forward

Symbol	Name	Function Class
Cfap45	cilia and flagella associated protein 45	1001 bp upstream
Cpgi1054	CpG island 1054	834 bp proximal
Gm70635	predicted gene, 70635	1162 bp downstream
Rr372460	regulatory region 372460	within coordinates
Rr423607	regulatory region 423607	1903 bp distal
Rr423608	regulatory region 423608	425 bp proximal
Rr423609	regulatory region 423609	926 bp proximal
Tssr10237	transcription start site region 10237	977 bp upstream