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rs108871338 SNP Detail
Summary
  • ID
    rs108871338
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr12:54791510 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GGCATGTACC ACACCTGTTC TCCCTTGGTT TCAGAGGCAG
    GTGTTCACCT CCGGGGCTTG CCTGGCCTTA GACACACAGC AGCAGTCCTG GGGTCACAGG
    M
    ACGTGGCAGA AGGCTCATCC ACACATGTTA TTTCTCCAGG TGTTGGTGAG AAAGCCCTGC
    ACACTATCTG CTAGTTCTGT GGCCTACCCA AGGCCTTTA                       
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss137771102 ENSMUSSNP1780783 ENSEMBL ENSEMBL_Sanger f SNP A C C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs108871338 SNP A C C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:54791510 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr260899 regulatory region 260899 within coordinates
Rr260900 regulatory region 260900 1691 bp proximal
Rr263772 regulatory region 263772 486 bp distal
Snx6 sorting nexin 6 1614 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory