rs108872345 SNP Detail

Summary

• ID
  rs108872345
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132460533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CAAGACATGT ACCGCAAACA AGTTTTGTGG ATAAAACATG AAACTTGGAA
  R
  AAATTGTGCT TCTTAGCGCC CTCTCTGGTG AATCCAGGTG TCCCATCCCA           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147477643	ENSMUSSNP1706859	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G		A
ss321335974	CHEV_4_132289137	CHEVERUD	SCREENING_POP	f	SNP				G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs108872345					SNP	G	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132460533 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	589 bp distal
Cpgi14970	CpG island 14970	235 bp proximal
Gm69628	predicted gene, 69628	1758 bp upstream
Rr398540	regulatory region 398540	365 bp downstream
Rr601049	regulatory region 601049	767 bp distal
Rr601050	regulatory region 601050	682 bp distal
Rr601051	regulatory region 601051	275 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	within coordinates
Tssr39417	transcription start site region 39417	1379 bp downstream
Tssr43695	transcription start site region 43695	1501 bp upstream
Tssr43696	transcription start site region 43696	784 bp upstream
Tssr43697	transcription start site region 43697	664 bp upstream
Tssr43698	transcription start site region 43698	636 bp upstream
Tssr43699	transcription start site region 43699	1603 bp downstream
Tssr43700	transcription start site region 43700	1615 bp downstream
Xkr8	X-linked Kx blood group related 8	676 bp upstream