rs108873745 SNP Detail

Summary

• ID
  rs108873745
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78133867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCT CAAACTCCAC CTTTCTGAAG
  C
  TTTTCCTTAC TTGGGCATAG TCAAC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148180770	ENSMUSSNP4972830	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss325024221	CHEV_15_78080097	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108873745					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78133867 () rs orientation: forward

Symbol	Name	Function Class
Ncf4	neutrophil cytosolic factor 4	within coordinates
Rr505230	regulatory region 505230	1590 bp distal
Rr505231	regulatory region 505231	796 bp distal
Tssr131900	transcription start site region 131900	1714 bp downstream
Tssr131901	transcription start site region 131901	1594 bp downstream
Tssr131902	transcription start site region 131902	948 bp upstream
Tssr131903	transcription start site region 131903	1221 bp upstream
Tssr135191	transcription start site region 135191	1904 bp upstream