rs108878616 SNP Detail

Summary

• ID
  rs108878616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102058995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AGGCAAGGGC TATATCTCCC TTCCTGGCTC CTAGCTATGC
  CACATGCTTC CACTACAGTA CTTATAATAT AGCGTGAACT GAACTTGTCA CTGTGCATCA
  R
  GTGTCTCAGC GCCATAACTA ATTCTCTAGG CAAGGGTCTG TTGTTTGATG TTTTTGTAGG
  CTGGCAGTTT GGCAAGGCCT ACATCAGCAG TTCTCAACCT T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135554457	ENSMUSSNP1339054	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108878616					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102058995 () rs orientation: forward

Symbol	Name	Function Class
Gm65665	predicted gene, 65665	within coordinates
Rr582191	regulatory region 582191	1373 bp distal
Rr582192	regulatory region 582192	520 bp proximal
Vangl1	VANGL planar cell polarity 1	1904 bp downstream