rs108885169 SNP Detail

Summary

• ID
  rs108885169
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85919420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGACACATC TTTATTCCTC
  CAGTACTGTG GTTAGCGTTC CTAAAATTTC CTAAGTGTGT TCTCGCACAC TGTACCTTCT
  GTGAACACAC ATGCCAGATG AAGAGGAGAC CTTAGGGATC TGTGTTGGGG AGAGAAGGTG
  TACAATGGGA GGTTCTGGAC TTTGGGTAAG CTGTAAGGTT GGTTAGTGTC CTAGGCACCC
  W
  AGGCTTTTTT TTTCCTCCAC ATCTTCCTCT ACCCTAGTAA TAATAATACT TATTATGCTA
  ACCTTTAACA AGAAGGAGTG ACCCTCTGAC CCTCTGCCAC CTCACAGGAT GGATTCAGGA
  CGGGTGCGAC CCACTTCTAA AACCTCCTCT GGTAGACATT AGCTCTGAAC AGCCAAATGA
  GAGGCAACTG AAGTCTTACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325486748	CHEV_17_86011332	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108885169					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85919420 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9587	CpG island 9587	664 bp proximal
Cpgi9588	CpG island 9588	1612 bp proximal
Gm55781	predicted gene, 55781	229 bp downstream
Gm55782	predicted gene, 55782	1390 bp upstream
Rr340290	regulatory region 340290	1019 bp distal
Rr340291	regulatory region 340291	within coordinates
Six3	sine oculis-related homeobox 3	1616 bp upstream
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr146084	transcription start site region 146084	1234 bp upstream
Tssr146085	transcription start site region 146085	1440 bp upstream
Tssr149705	transcription start site region 149705	339 bp downstream
Tssr149706	transcription start site region 149706	1062 bp downstream