rs108885398 SNP Detail

Summary

• ID
  rs108885398
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180075547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AGTGAATTCT CTTCTCACAG ATATCTAGAT CAGGGATGTG
  CCTCGGTGGC AGAGCCTGCC ATGCCTGAGG CCTTGGGTTT CATCCACGGC CCCACATCAA
  R
  GTTATCCTTA AGCCTGGGTA TTCTGTTGCT GGTCTCTTCA ATGCTGGGCT AGAGTAGACT
  ATTATCTTAT CTGTTGTGGT AAGTACACAG TTCAAGAGTT T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146378742	ENSMUSSNP6537251	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108885398					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180075547 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Psen2	presenilin 2			Intron
				Noncoding-Transcript-Variant
Rr372537	regulatory region 372537			1886 bp upstream
Rr424422	regulatory region 424422			1887 bp distal
Rr424423	regulatory region 424423			within coordinates
Rr424424	regulatory region 424424			158 bp proximal
Rr424425	regulatory region 424425			893 bp proximal
Rr424426	regulatory region 424426			1772 bp proximal