rs108885672 SNP Detail

Summary

• ID
  rs108885672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67188424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTATTAA GACCTAACGT
  TTAATGCAAA GCACGTTTGC TTCCCAAGGT GAAAAACCTG ACAGAGGAGA TGGCAGGCCT
  GGATGAAAAT ATCGCCAAGC TGACCAAGGA GAAGAAGGCC CTCCAGGAGG CCCACCAGCA
  GACCCTGGAT GACCTGCAGG CAGAGGAGGA CAAAGTCAAC ACCCTGACCA AAGCCAAAAC
  Y
  AAGCTGGAAC AGCAAGTGGA TGACGTAAGC ACGGTTCAGA TGGCCTTCTG AAGTATTTCT
  TTAAGTGCAT TTCGATTTTA ACAGGTTTCT CTTTCCCCAT CAGCTTGAGG GATCGCTAGA
  GCAAGAAAAG AAGCTGAGGA TGGACTTAGA AAGAGCCAAG AGGAAACTGG AGGGGGACCT
  GAAACTGGCC CAAGAGTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss132327381	ENSMUSSNP4540826	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108885672					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67188424 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3068	CpG island 3068	873 bp proximal
Myh8	myosin, heavy polypeptide 8, skeletal muscle, perinatal	within coordinates
Tssr102227	transcription start site region 102227	867 bp upstream
Tssr102228	transcription start site region 102228	1729 bp upstream
Tssr108547	transcription start site region 108547	145 bp downstream
Tssr108548	transcription start site region 108548	898 bp downstream
Tssr108549	transcription start site region 108549	1724 bp downstream