rs108888090 SNP Detail

Summary

• ID
  rs108888090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102283361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TACGTATGCT AAGCAGGTTC TCTTCTGACT CCTCCCCGAG
  TCCTACAGCC AGAGTTTAAA ATCGGTTTCT TTCACATTGT GTGTGTGTAT GTGTGTGTGT
  R
  TGTGTGTGTG TTTCCTTTCC CTATATTCCT CTCCTGGGAA CACATGCGAG GTTTCAGCTG
  GGCTACATCT GCCTGTGCTG TGTATATTTA TTCTGGAGTT A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147112323	ENSMUSSNP5873864	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108888090					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102283361 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	736 bp distal
Fjx1	four jointed box 1	1224 bp upstream
Rr561695	regulatory region 561695	1672 bp distal
Rr561696	regulatory region 561696	427 bp distal
Rr561697	regulatory region 561697	427 bp proximal
Rr561698	regulatory region 561698	554 bp proximal
Tssr25397	transcription start site region 25397	1242 bp upstream
Tssr25398	transcription start site region 25398	1201 bp upstream
Tssr25399	transcription start site region 25399	1173 bp upstream