rs108889108 SNP Detail

Summary

• ID
  rs108889108
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:100590443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCATCTGT AAGGACTACA
  CATTTCTATT TGCTATTGAT TTCTAAATTT ATTACCCTGT ACTCAGAGAA CACACTTCTT
  AATGTTTTAA ACTCCTTTAA CTTTTGAGGT TTTTAAGGTG TGGAAAATGG CCTATTTTAA
  TGTTCCAAAT AGATGTACTT TGTTGTTGTT CCAAAATATT CTGTACTTTG TTGTTACTGG
  R
  GCTGTTTAAG AGAATTCTAT ACAAGCCTAT CACAAGTGTA GGTAAAGTGC TGATTTTTAT
  CTCCTTTTTG ATATTTTCCT AGGTATGTTT ACAATTATTG AAGTAAGACA GTATTATTGC
  ATTGTCTATT TCTCCTTCTA TTTCTTTCAG TTTTTGCTTT ATGTATTTGG TATGCATGTT
  TATTTATAAT CATTACATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss137995781	ENSMUSSNP6676494	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs108889108					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100590443 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm48585	predicted gene, 48585			601 bp downstream
Gm48586	predicted gene, 48586			451 bp upstream
Rps6ka5	ribosomal protein S6 kinase, polypeptide 5			Intron
				Noncoding-Transcript-Variant