rs108890730 SNP Detail

Summary

• ID
  rs108890730
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52180295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCGAGCTA GCCGCCTTCT GTTCCAGTGT ACGCTTGGGG
  CGCCCGATTT CTTTTTCTTC CCTTTCCTTC GCTTTCCCTC TTGCCCTCAA ACTTCAGAAT
  T
  CCGCCTGCCC TCGCCTGGCT TATTCCCCCC AAGCCCCTTT TAGGGGGCTC TAATTAGTAA
  CGCTGTTTCC CCAGCGTAGC CCTTCCCATA AATTATCTC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss133191035	ENSMUSSNP3026383	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321799664	CHEV_6_52153314	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs108890730					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52180295 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17423	CpG island 17423	within coordinates
Gm28308	predicted gene 28308	within coordinates
Hoxa3	homeobox A3	within coordinates
Hoxa5	homeobox A5	within coordinates
Hoxaas3	Hoxa cluster antisense RNA 3	within coordinates
Rr630365	regulatory region 630365	1222 bp proximal
Rr630366	regulatory region 630366	1262 bp proximal
Rr630367	regulatory region 630367	1339 bp proximal
Tssr60991	transcription start site region 60991	924 bp downstream
Tssr60992	transcription start site region 60992	936 bp downstream
Tssr60993	transcription start site region 60993	1000 bp downstream
Tssr60994	transcription start site region 60994	1072 bp downstream
Tssr60995	transcription start site region 60995	1100 bp downstream