rs108892935 SNP Detail

Summary

• ID
  rs108892935
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178164879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTCC AGAGCGGCGA TGCCCTCCTC
  T
  TCCTCGTCGT CTTCGGCGCC AGCCG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss146354954	ENSMUSSNP3289932	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs108892935					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178164879 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1090	CpG island 1090	within coordinates
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	within coordinates
Rr29068	regulatory region 29068	within coordinates
Rr372516	regulatory region 372516	within coordinates
Tssr316	transcription start site region 316	227 bp upstream
Tssr317	transcription start site region 317	273 bp downstream
Tssr318	transcription start site region 318	490 bp downstream
Tssr10384	transcription start site region 10384	1391 bp downstream
Tssr10385	transcription start site region 10385	1177 bp downstream
Tssr10386	transcription start site region 10386	1100 bp downstream
Tssr10387	transcription start site region 10387	136 bp downstream
Tssr10388	transcription start site region 10388	within coordinates
Tssr10389	transcription start site region 10389	556 bp upstream
Tssr10390	transcription start site region 10390	657 bp upstream
Tssr10391	transcription start site region 10391	880 bp upstream
Tssr15481	transcription start site region 15481	1221 bp upstream
Tssr15482	transcription start site region 15482	1150 bp upstream
Tssr15483	transcription start site region 15483	906 bp upstream
Tssr15484	transcription start site region 15484	196 bp upstream
Tssr15485	transcription start site region 15485	142 bp upstream
Tssr15486	transcription start site region 15486	61 bp upstream
Tssr15487	transcription start site region 15487	within coordinates
Tssr15488	transcription start site region 15488	334 bp downstream
Tssr15489	transcription start site region 15489	359 bp downstream
Tssr15490	transcription start site region 15490	392 bp downstream
Tssr15491	transcription start site region 15491	426 bp downstream
Tssr15492	transcription start site region 15492	460 bp downstream