rs108893355 SNP Detail

Summary

• ID
  rs108893355
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172195748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA TACACATCTT AAGCAGTACT
  R
  TCCTAGAAAG ATTTCAGTGG GATAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss120013106	PARCsnp_1.08820	PARC_SEQ	INBRED	f	SNP	A	G
ss146189475	ENSMUSSNP1869614	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320124572	CHEV_1_174298312	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs108893355					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172195748 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	748 bp proximal
Cpgi1046	CpG island 1046	1603 bp proximal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Rr423550	regulatory region 423550	787 bp proximal