rs108893960 SNP Detail

Summary

• ID
  rs108893960
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52209328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATATGAAT TATACCTATT
  TATAAGCCAA CTGGCTTCAT CCCTTTACAT AGAAGATTTT CAGGTTAGTT TCACTACAAA
  TCAGACTTCA AGGTTTCCTT GGCACTGTAG CTATGGCCTC CGGTTGTGAC CACTAGTCAT
  TGATAGCTCC ATGAAAACAT ACACACACAC ACACACACAC ACACACACAC ACACACACAC
  W
  CACAAAGTCT TATACACACA CGCCCAAACA TACACATTCA CACACAGACA CTCACATACT
  CATTTATACA CACATTGACA CACAACACTC ACATACAAAT TTACACACAC ACACACACAC
  ACACACACAC ACTCAAACAT ACACATTCAC ACACATATAC TCACACACTC ACTTATTCAC
  ACACACTGGC ATACATATAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RIIIS/J	SEA/GnJ	SPRET/EiJ	SWR/J	WSB/EiJ
ss130689169	NCBIM37_NT_039649_chr17_52041625	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RIIIS/J	SEA/GnJ	SPRET/EiJ	SWR/J	WSB/EiJ
rs108893960					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130689169	NCBIM37_NT_039649_chr17_52041625	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52209328 () rs orientation: forward

Symbol	Name	Function Class
Gm20098	predicted gene, 20098	within coordinates
Rr335418	regulatory region 335418	673 bp proximal
Rr370289	regulatory region 370289	1779 bp upstream
Rr405357	regulatory region 405357	1495 bp upstream
Tssr145177	transcription start site region 145177	1905 bp upstream
Tssr148690	transcription start site region 148690	1620 bp downstream
Tssr148691	transcription start site region 148691	1650 bp downstream