rs108894521 SNP Detail

Summary

• ID
  rs108894521
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113876955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ACACGCATGT ACTCAAAACC AGTGTTGCAG TGAAGTCATG
  TGATACAACA CAGGCAATAA CCATCGCAAA CACCTTGTAT TAATTTTACA TTTGATTTGG
  R
  ATTCAATTTT GGTCATAGTG AATTCATGAG CCATATAATG TTTTTTGTTT TGTTTTGTTT
  AAAAAAAAAA ACTGATGGTT ACCAGTATAT ATGCGGTATG A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147245731	ENSMUSSNP4783877	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108894521					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113876955 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	808 bp downstream
Rr562815	regulatory region 562815	764 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	1088 bp downstream
Tssr601	transcription start site region 601	1098 bp downstream
Tssr19429	transcription start site region 19429	810 bp upstream
Tssr19430	transcription start site region 19430	905 bp upstream
Tssr19431	transcription start site region 19431	985 bp upstream
Tssr19432	transcription start site region 19432	1081 bp upstream
Tssr19433	transcription start site region 19433	1647 bp upstream
Tssr19434	transcription start site region 19434	1700 bp upstream
Tssr25660	transcription start site region 25660	837 bp downstream
Tssr25661	transcription start site region 25661	854 bp downstream
Tssr25662	transcription start site region 25662	911 bp downstream
Tssr25663	transcription start site region 25663	974 bp downstream
Tssr25664	transcription start site region 25664	1004 bp downstream
Tssr25665	transcription start site region 25665	1112 bp downstream
Tssr25666	transcription start site region 25666	1679 bp downstream
Tssr25667	transcription start site region 25667	1706 bp downstream
Tssr25668	transcription start site region 25668	1742 bp downstream
Tssr25669	transcription start site region 25669	1771 bp downstream