rs108895244 SNP Detail

Summary

• ID
  rs108895244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30065840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCGAAGAA GGCTGGAGCT
  GACCCAAGGA CAGGTATCCA TGTTCCACCC CAGCTTCTCC CCTCAAACTG GTTGCACGCC
  AATTCTGCGC GCGCGCGCGC GCGCGCACAC ACACACACAC ACACACACAC ACACACACAC
  ACACACAAAT ATCTCTCAGC CTAGAAATGG TTCCAATAGC TCAGAGATGT TTTCATAGCT
  Y
  TAAAGAGCTC AATGCAGAGA AGTGAGTTTG GTGCTGACTA CAGGCGTTAG TAATGAGCAC
  ACTTCATCAG TGAGATGTGC TGGCCCAGGC AGTGTCCATG GATCAGGGCA CCTAACCTGT
  CCAGCTGTCT CTGAGGGAGG CTGTTACTAT GTATTCCTTA GGATGTAGGG AACTGGAATT
  CAGCCAGTCT AACTTACATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325355140	CHEV_17_29983811	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108895244					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30065840 () rs orientation: forward

Symbol	Name	Function Class
Gm56908	predicted gene, 56908	within coordinates
Mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1	within coordinates
Rr330462	regulatory region 330462	240 bp distal
Rr330463	regulatory region 330463	1561 bp proximal
Rr341132	regulatory region 341132	40 bp distal
Rr341133	regulatory region 341133	1902 bp proximal
Rr392501	regulatory region 392501	within coordinates
Rr392502	regulatory region 392502	1917 bp upstream
Tssr143596	transcription start site region 143596	331 bp downstream
Tssr143597	transcription start site region 143597	308 bp downstream
Tssr143598	transcription start site region 143598	1354 bp upstream